Site Map&your Digital Footprint

Rapid site identification and ranking:
SiteMap can treat entire proteins to locate binding sites whose size, functionality, and extent of solvent exposure meet user specifications. SiteScore, the scoring function used to assess a site's propensity for ligand binding, accurately ranks possible binding sites to eliminate those not likely to be pharmaceutically relevant.

  1. Site Map&your Digital Footprint Quiz
  2. Site Map&your Digital Footprint Template

Integration with Glide:
SiteMap fits perfectly into the Schrödinger structure-based drug design work flow. Sites identified by SiteMap can easily be used to set up Glide grids for virtual screening experiments.

OpenStreetMap is a map of the world, created by people like you and free to use under an open license. Hosting is supported by UCL, Bytemark Hosting, and other partners. Site Map; 700 NE 13th St Oklahoma City, OK 73104 Map + Directions. For Hospital Information: (405) 271-4700. For appointments: (405) 271-2222. PowerMapper Desktop One click site mapping Free Trial Buy Now PowerMapper is an automatic site mapping tool for information architects, usability analysts and web developers. It is used in more than 50 countries, by 30% of the Fortune 100, and major organizations like NASA and MIT.

Site visualization tools:
SiteMap highlights regions within the binding site suitable for occupancy by hydrophobic groups or by ligand hydrogen-bond donors, acceptors, or metal-binding functionality. Distinguishing the different binding site sub-regions allows for ready assessment of a ligand's complementarity.

Tools for exploiting targets of opportunity:
Active site maps show where modifications to a ligand structure would be expected to promote binding.

Citations and Acknowledgements

Schrödinger Release 2020-4: SiteMap, Schrödinger, LLC, New York, NY, 2020.

Halgren, T., 'Identifying and Characterizing Binding Sites and Assessing Druggability,' J. Chem. Inf. Model., 2009, 49, 377–389.

Halgren, T., 'New Method for Fast and Accurate Binding-site Identification and Analysis,' Chem. Biol. Drug Des., 2007, 69, 146–148.

If you own or maintain a website or intend to own one, wouldn't it be great if you get frequent visitors who find satisfaction in getting exactly the information they need from your page?

Back in 2005, the search engine Google launched the Sitemap 0.84 Protocol, designed to use the XML format.

A sitemap is a way of organizing a website, identifying the URLs and the data under each section. Previously, the sitemaps were primarily geared for the users of the website. However, Google's XML format was designed for the search engines, allowing them to find the data faster and more efficiently.

Google's new sitemap protocol was developed in response to the increasing size and complexity of websites. Business websites often contained hundreds of products in their catalogues; while the popularity of blogging led to webmasters updating their material at least once a day, not to mention popular community-building tools like forums and message boards. As websites got bigger and bigger, it was difficult for search engines to keep track of all this material, sometimes 'skipping' information as it crawled through these rapidly changing pages.

Through the XML protocol, search engines could track the URLs more efficiently, optimizing their search by placing all the information in one page. XML also summarizes how frequently a particular website is updated, and records the last time any changes were made.

Site Map&your Digital Footprint Quiz

XML sitemaps were not, as some people thought, a tool for search engine optimization. It does not affect ranking, but it does allow search engines to make more accurate rankings and searches. It does this by providing the data that a search engine needs, and putting it one place-quite handy, given that there are millions of websites to plough through.

To encourage other search engines to adopt the XML protocol, Google published it under the Attribution/Share Alike Creative Commons license. Its efforts paid off. Recently, Google happily announced that Yahoo and Microsoft had agreed to 'officially support' the XML protocol which has now been updated to the Sitemap 0.9 protocol and jointly sponsored, a site setup to explain the protocol. This is good news for website owners, and an applaudable sign of cooperation between known competitors.

The shared recognition of the XML protocol means that website developers no longer need to create different types of sitemaps for the different search engines. They can create one file for submission, and then update it when they have made changes on the site. This simplifies the whole process of fine-tuning and expanding a website.

Through this move, the XML format will soon become a standard feature of all website creation and development. Webmasters themselves have begun to see the benefits that this file provides. Search engines rank a page according to the relevance of its content to particular key words-but until the XML format, there were instances when that content was not properly picked up. It was often frustrating for webmasters to realize that their efforts to build a website were left unseen. Blogs, additional pages, or even the addition of multimedia files took hours to create. Through the XML file, those hours will not be wasted, and will be seen by the three leading search engines-Google, Microsoft, and Yahoo.

In a recent move has now begun to support xml sitemaps and in an update to the sitemaps protocol it is now possible to tell all search engines the location of your xml sitemap by placing an entry into your robots.txt file.


To create your xml sitemap and keep the search engines informed of changes to your site try our free online sitemap generator. In addition to an xml sitemap our free sitemap generator will also create an html sitemap which you can use for your human visitors.

Site Map&your Digital Footprint Template

FootprintSite map&your digital footprint chart 18/04/07


An example of XML sitemap, created for our site: sitemap.xml (updated daily)